#!/bin/sh

#SBATCH --job-name=qiime2_tutorial

#SBATCH --partition=all-HiPri

## NOTE: %u=userID, %x=jobName, %N=nodeID, %j=jobID, %A=arrayID, %a=arrayTaskID
#SBATCH --output=/scratch/%u/qiime2-moving-pictures-tutorial/%x-%N-%j.out  # Output file
#SBATCH --error=/scratch/%u/qiime2-moving-pictures-tutorial/%x-%N-%j.err   # Error file

#SBATCH --mem=5G        # Total memory needed per task (units: K,M,G,T)
##SBATCH --time=<D-HH:MM>  # Total time needed for job: Days-Hours:Minutes

## ----- Parallel Threads -----
## Some programs and libraries (OpenMP) implement parallelism using threads
## (light-weight sub-processes). Advantages: Less processing overhead and
## ability to share memory.  Disadvantages: All threads must run on the same
## node.  Make sure that the resources you request are feasible,
## e.g. --cpus-per-task must be <= # of cores on a node.
##SBATCH --cpus-per-task <C>   # Request extra CPUs for threads
##SBATCH --mem-per-cpu <M>     # If your threads us a lot of memory, and you
                               # plan to vary # of threads, use this not --mem=

##SBATCH --reservation=ssilayi_107 #uncomment this line if you're running before 2021-03-03T23:59:00
                                   #otherwise you can delete the line


export TMPDIR=/tmp/


## Run your program or script
qiime tools import \
  --type EMPSingleEndSequences \
  --input-path emp-single-end-sequences \
  --output-path emp-single-end-sequences.qza